If your galleries are limited to 50 images and you see the Juicebox badge/link at the bottom-right corners, then your galleries are Juicebox-Lite galleries, not Juicebox-Pro. (Juicebox-Pro does not contain an image limit or branding.)

Instructions for upgrading Showkase to use a Pro viewer can be found here.
Be sure to rebuild your existing galleries after upgrading ('Pages (tab) -> Edit (gallery page)-> Advanced (tab) -> Rebuild this Juicebox gallery').

The page you linked to is a Drupal page.
Drupal is a Content Management System whose pages are not designed to fit completely within a user's browser window.
Vertical scrolling is normal and (on most Drupal pages) necessary to view all content on the page.
It would not be possible to constrict all content on a Drupal page to fit within a user's browser window (no matter what its size) without any scrolling.

You would have to manually construct your web page using the View Resizable Gallery with Top Menu Example sample gallery as a template. You can view the source of the web page in a browser, copy it and swap the header, gallery and footer for your own content.

Alternatively, you could try just reducing the height of your gallery (in your Drupal page) so that less vertical scrolling is necessary for most users.

[Post split to new thread.]

With Juicebox-Lite (the free version), it is not possible to add padding to a gallery from within the plugin's interface.
However, if you purchased Juicebox-Pro (and upgraded the plugin following the 'Upgrading to Juicebox-Pro' instructions on this web page), you would have access to the imagePadding and stagePadding configuration options which you could enter into the plugin's 'Pro Options' text area.
Please note that both imagePadding and stagePadding add padding to all four sides of the image and stage respectively (not just the top).

For reference, a list of all available configuration options can be found here.

Otherwise, you could edit the gallery's 'index.html' page after the gallery has been created and add padding above the gallery using CSS.

Unfortunately, the security restrictions in IE11, Chrome and Opera which prevent the loading of local XML files cannot be circumvented and so there is no possibility of previewing Juicebox galleries locally in these browsers (without using emulation).
As such, there is nothing we can do to allow users to preview Juicebox galleries locally in IE11 (or Chrome or Opera) in the future.

As arachnid says, you can use 'F12 -> Emulation -> Document Mode -> 10' (to emulate IE10) within IE11 (or use Firefox or Safari).

This problem seems to be isolated to Safari on a Mac.
I have viewed your galleries in Safari 5.1.7, Chrome 31, Firefox 26.0, IE11 and Opera 18 on a PC and all galleries I have tried expanding work fine in all browsers.

First of all, try clearing your browser's cache before reloading your web page to ensure that your browser is fetching and using the most recent files from your web server.

If this does not help, then try setting expandInNewPage="TRUE" in your gallery configuration options.
Please see here for more details about the expandInNewPage configuration option.

You could also try changing useFullscreenExpand from 'TRUE' to 'FALSE' to see if this makes a difference.
I realise that you may not want to change the value of this configuration option permanently but it may help to troubleshoot the problem.

With Juicebox, you could create many individual galleries (each with as many images as you like) but you would need to link them all together manually (possibly by following the Multiple Galleries instructions and examples here).

An alternative solution might be to use another one of our products: Showkase.
Showkase is a PHP web application (although it does not require or use a database) which allows you to create multiple galleries online in a browser interface and automatically have them listed and linked together on gallery index pages.
Demo sites can be found here and a sample gallery index page can be found here.

If you do not want to use PHP on your site at all, then Showkase would not be a suitable solution and you would need to assemble your site (incorporating multiple Juicebox galleries) manually on your computer and then upload it to your web server via FTP.

Another possible solution would be to use the Juicebox skin for jAlbum.
You would be able to drag and drop a complete folder structure into jAlbum's main window. A Juicebox gallery would be created for each folder/subfolder in your input structure and all the galleries will be linked together by a JavaScript navigation tree. A sample gallery with two folders can be found here.
The complete album would be created on your computer and you would then upload the files to your web server. (There is no PHP or database involved in this process.)

Your gallery's height is currently expressed as a percentage.
This will be a percentage of the gallery's parent container but, when the page is first loaded, the gallery's parent container is not visible and Juicebox may see its height as being 0px. 60% x 0px = 0px which may explain why the gallery is not displayed.

Instead, try expressing your gallery's height as a fixed pixel value (e.g. 600px) to see if this makes a difference.

If this does not help, then try also adding the gallery's height as inline CSS to the gallery container div, ie.:

<div id="juicebox-container" style="height: 600px;"></div>

... similar to the 'Using Percentage Heights' suggestion here.

Also, as you have multiple galleries which may be displayed on the same page, make sure you embed each gallery into a container with a unique id.

For example:

<script type="text/javascript" src="http://www.monpetitblog.net/galerie/2013_11_juice/jbcore/juicebox.js">

<script type="text/javascript">
new juicebox({
baseUrl : 'http://www.monpetitblog.net/galerie/path_to_gallery/',
containerId : "juicebox-container1",
galleryTitle: "Sept.'13",
galleryWidth: "100%",
galleryHeight: "600",
});
</script>
<div id="juicebox-container1" style="height: 600px;"></div>

<script type="text/javascript">
new juicebox({
baseUrl : 'http://www.monpetitblog.net/galerie/path_to_another_gallery/',
containerId : "juicebox-container2",
galleryTitle: "Sept.'13",
galleryWidth: "100%",
galleryHeight: "600",
});
</script>
<div id="juicebox-container2" style="height: 600px;"></div>

Incidentally, as you have WP-Juicebox activated, the 'juicebox.js' JavaScript file will be automatically loaded on your pages so there is no need to include the file in each and every gallery you manually embed.
(If you were to deactivate WP-Juicebox, you would need to include the file in each gallery's embedding code.)

As you note, your logo is currently part of your gallery's background (set via the backgroundUrl configuration option).
Instead, you could use either the Back Button or the Gallery Title as an image link.

In JuiceboxBuilder-Pro, you could enter the following into either the Gallery Title field (in the 'Customize -> Lite' section) or the Back Button Text field (in the 'Customize -> Back Button' section).

<a href="http://www.smallbusinessphoto.com"><img src="images/Logo-Dark.png" width="265" height="60" alt="logo" /></a>

For a link in the Gallery Title to be active, please set galleryTitlePosition="TOP" (in the 'Customize -> General' section).
The link will not be active if galleryTitlePosition="OVERLAY". (This bug will be fixed in the next version of Juicebox-Pro.)

If editing your gallery's XML file to add the configuration options manually, you will need to escape the XML entities as documented in this FAQ:
How do I add HTML formatting to the Gallery Title or Back Button?

This issue has now been addressed and will be included in the next version of Juicebox.
There is no set release date for the next version of Juicebox-Pro but if you would like to be notified of new releases, please subscribe to our newsletter at the foot of our homepage or follow us on Twitter @JuiceboxGallery.

For anyone reading this thread, please note that this does not affect the functionality of the gallery and the code being referred to can be seen only by using developer tools in a browser (it cannot be seen by viewing the source of the web page).

Have you uploaded all your gallery files (the 'jbcore', 'images' and 'thumbs' folders and the 'config.xml' file) to the same directory on your web server as the web page containing the gallery's embedding code (Step #2 in the embedding instructions here)? It looks like the gallery files may not yet have been uploaded (or at least not into the correct location).

Just upload the contents of your gallery folder to your root directory (alongside your 'bullshad2013.html' page) and your gallery should display OK.

If you just want to display your gallery on a page of its own, you can upload the entire gallery folder (as created by JuiceboxBuilder) and open the gallery's own 'index.html' file in a browser.

If you want to a create link to your gallery from another web page, just link to this 'index.html' page.

Where exactly are you looking for 'alt tags'?

Are you referring to 'alt' attributes within the <img> tags (visible only within a browser's developer tools and not visible via the 'view page source' option) generated dynamically when Juicebox displays the gallery?
If so, then, as I mentioned previously, 'alt' attributes are included only in the SEO code (in the gallery's 'index.html' page) and not in the code generated dynamically (by the 'juicebox.js' JavaScript file) when Juicebox displays the gallery.

(This will be addressed for the next version of Juicebox and 'alt' attributes will be added to the dynamically generated code as well as the SEO code in the gallery's 'index.html' page.)